Teaching
Courses organized
- 2023 - Co-organizer of ASIAME 3 (South and South-East Asia Workshop in Aquatic Microbial Ecology) in Quy Nhon, Vietnam - 10 days - June 2023
- 2019 - Co-organizer of APC 12 (Advanced Phytoplankton Course) in Roscoff, France - 3 weeks - May-June 2019
- 2017 - Co-organizer of ASIAME 2 (South Asia Workshop in Aquatic Microbial Ecology) in Andaman Islands, India - 15 days - November 2017
- 2015-2017 - Metagenomics of marine microbes (6 h lecture, 4 h practical session) - Organizing Committee. Marine Ecological and Evolutionary Genomics, Roscoff, June 2015
- 2014 - Organizer of International Phytoplankton course, Macaé, Brasil (2 weeks) - December 2014
- 2013 - Co-organizer of ASIAME (First South East Asia Workshop in Aquatic Microbial Ecology) in Vietnam, Nha Trang- 10 days - October 2013
- 2013 - Co-organizer of the UPMC Daniel-Jouvance School in Marine-Biology - Arraial do Cabo, Brasil - March 2013
Courses taught
- 2024 BIOS-3300 Marine Biology, University of Oslo, coordinated by A. Lopes dos Santos, Oslo, Norway
- 2024 Metabarcoding for Phytoplankton - 4 h - Advanced Phytoplankton Course 13, Stazione Zoologica, Naples, coordinated by A. Zingone, M. Montresor, D. Sarno
- 2024 ABIMS cluster - Master teaching
- 2023 Culture Collection Data Management - BIOS-5313 Toxic Algae, University of Oslo, coordinated by B. Edvardsen, Oslo, Norway
- 2023 Culture Collection Data Management - Marine Phytoplankton Culturing Training Course, coordinated by P. Gourvil, Roscoff, France
- 2023 ASIAME 3 - South and South-EAst Asia Workshop in Aquatic Microbial Ecology, Vietnam, coordinated by J-C Auguet (CNRS Montpellier): Evolution and Diversity of Protists, Introduction to R.
- 2023 ECODIM - Ecology and Diversity of Marine Microorganisms, coordinated by Osvaldo Ulloa (University of Concepcion, Chile): Protist diversity, Introduction to R, Metabarcoding analysis.
- 2022 Metabarcoding data analysis - ES2304/ES7027: Microbes on Natural Ecosystems, coordinated by A. Lopes dos Santos, ASE, Nanyang Technological University, Singapore - 3 h + final presentations
- 2021 R for Microbial Ecology - ES2304/ES7027: Microbes on Natural Ecosystems, coordinated by A. Lopes dos Santos, ASE, Nanyang Technological University, Singapore - 6 h + final presentations
- 2021 Scales in Plankton Ecology - ES3305/ES7022: Currents Issues in Ecology, coordinated by D. Wardle, ASE, Nanyang Technological University, Singapore - 3 h
- 2021 Introduction to R / Data wrangling, plotting and mapping with R - ES7023 & ES0002: Fundamentals of Data Science for Earth and Environmental Systems Science , coordinated by D. Lallemant, ASE, Nanyang Technological University, Singapore - 9 h
- 2020 Introduction to R / Scales in Marine Ecoystems - ES3307: Experimental Design and Analysis, coordinated by E. Slade, ASE, Nanyang Technological University, Singapore - 6 h
- 2020 Introduction to R / Data wrangling, plotting and mapping with R - ES7023 & ES0002: Fundamentals of Data Science for Earth and Environmental Systems Science , coordinated by D. Lallemant, ASE, Nanyang Technological University, Singapore - 9 h
- 2019 Introduction to R / Data wrangling, plotting and mapping with R - ES7023 & ES0002: Fundamentals of Data Science for Earth and Environmental Systems Science , coordinated by D. Lallemant, ASE, Nanyang Technological University, Singapore - 9 h
- 2018 Using phyloseq for metabarcode data analysis, Formation metabarcoding, Roscoff - 3 h
- 2017 R for microbial ecology, ASIAME 2, South Asia Workshop in Aquatic Microbial Ecology, India
- 2012-2017 Metagenomics of marine microbes (6 h lecture, 4 h practical session), Marine Ecological and Evolutionary Genomics, Roscoff
- 2018-2006 Eukaryotic picoplankton, Introduction to R and to metabarcode processing (10 days). ECODIM workshop (South America post graduate course), University of Concepcion, Chile (takes place every two years)
- 2012 Introduction to flow cytometry (3 h lecture, 6 h practical session). Oceanography Institute, Universidade de Sao Paulo, May 2012
Tutorials available on line
R
Course content
ASIAME classes - eukaryotes and intro to R
ECODIM classes - eukaryotes, R, metabarcoding
Introduction to metabarcoding data analysis
Introduction to R; Data wrangling; R markdown; Metabarcode analyses
Scales in plankton ecology
Introduction to R; R markdown; Git; Data wrangling; Making maps
Introduction to R; R markdown; Git; Data wrangling; Making maps; Time series
Introduction to R; R markdown; Git; Data visualization; Scales in marine systems
An introduction to R for data science
